Fig008¶
Probability density function¶
Hydrogen bonding¶
The following table presents the probability of the hydrogen bonding (within 2.5 Å).
| System | H bond |
|---|---|
| Reduced | 0.865 |
| Oxidized | 0.997 |
| Cu(I) | 0.063 |
Quantitative¶
Reduced roGFP2
| Distance (Å) | Density |
|---|---|
| 1.49 | \(2.687 \times 10^{-10}\) |
| 1.96 | \(2.045 \times 10^{+00}\) |
| 3.79 | \(3.777 \times 10^{-03}\) |
| 3.82 | \(4.024 \times 10^{-03}\) |
| 4.01 | \(9.136 \times 10^{-04}\) |
| 4.09 | \(1.120 \times 10^{-03}\) |
| 4.23 | \(2.843 \times 10^{-04}\) |
| 4.28 | \(3.749 \times 10^{-04}\) |
| 4.44 | \(1.677 \times 10^{-08}\) |
| 4.53 | \(1.313 \times 10^{-04}\) |
| 4.63 | \(1.069 \times 10^{-09}\) |
| 4.88 | \(4.034 \times 10^{-70}\) |
| 5.12 | \(9.748 \times 10^{-12}\) |
| 5.23 | \(1.299 \times 10^{-04}\) |
| 5.34 | \(1.111 \times 10^{-10}\) |
Oxidized roGFP2
| Distance (Å) | Density |
|---|---|
| 1.11 | \(0.000 \times 10^{+00}\) |
| 1.55 | \(5.741 \times 10^{-07}\) |
| 1.90 | \(3.312 \times 10^{+00}\) |
| 3.16 | \(2.176 \times 10^{-04}\) |
| 3.23 | \(1.120 \times 10^{-16}\) |
| 3.35 | \(2.510 \times 10^{-26}\) |
| 3.44 | \(2.350 \times 10^{-04}\) |
| 3.67 | \(8.714 \times 10^{-182}\) |
roGFP2 and Cu(I)
| Distance (Å) | Density |
|---|---|
| 1.50 | \(5.409 \times 10^{-14}\) |
| 2.95 | \(1.246 \times 10^{+00}\) |
| 4.93 | \(4.549 \times 10^{-04}\) |
| 5.04 | \(7.231 \times 10^{-04}\) |
| 5.12 | \(2.563 \times 10^{-04}\) |
| 5.17 | \(4.277 \times 10^{-04}\) |
| 5.31 | \(1.166 \times 10^{-05}\) |
| 5.37 | \(1.074 \times 10^{-04}\) |
| 5.53 | \(1.709 \times 10^{-12}\) |